File:Multithreaded-comparative-RNA-secondary-structure-prediction-using-stochastic-context-free-grammars-1471-2105-12-103-S1.ogv

Multithreaded-comparative-RNA-secondary-structure-prediction-using-stochastic-context-free-grammars-1471-2105-12-103-S1.ogv(Ogg Theora video file, length 17 s, 560 × 420 pixels, 295 kbps, file size: 605 KB)


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Summary

Description
English: Animation of distribution of the SCFG calculations. The animation demonstrates the asynchronous wavefront computational approach, and was created on the basis of actual runtime data during the folding of a sequence of 460 nt, on a 2-core machine. The animation is divided into three parts: the inside (red/green), outside (yellow/blue) and expectation (cyan/magenta) calculations. The first colour represents jobs that are ready to be executed (because all their dependencies are fulfilled), and are therefore placed in a queue. At any time during the animation, the two jobs that entered the queue earliest are under execution (not shown), as the execution happens in a threadpool corresponding to the available number of cores (here, 2). When a job is finished, it changes to the second colour, and any newly available jobs (with finished dependencies) are pushed onto the queue.
Date
Source Sukosd Z, Knudsen B, Vaerum M, Kjems J, Andersen E (2011). "Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars". BMC Bioinformatics. DOI:10.1186/1471-2105-12-103. PMID 21501497. PMC: 3102635.
Author Sukosd Z, Knudsen B, Vaerum M, Kjems J, Andersen E
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This file was transferred to Wikimedia Commons from PubMed Central by way of the Open Access Media Importer.
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Date/TimeThumbnailDimensionsUserComment
current23:22, 4 June 201317 s, 560 × 420 (605 KB)Open Access Media Importer BotAutomatically uploaded media file from Open Access source. Please report problems or suggestions here.

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