GLAM/Newsletter/July 2014/Contents/Open Access report

This Month in GLAM – Volume IV, Issue VII, July 2014 Normal version • Single page version

Open Access report

JATS 4 Reuse; Automated import into Wikisource and Commons

By Daniel Mietchen

JATS 4 Reuse

At a workshop in Cambridge in June, a working group was founded that aims at making documents marked up in JATS more amenable to reuse by automated tools like the Open Access Media Importer (see below). This workgroup - dubbed JATS4R (JATS for reuse) - will have regular teleconferences on the first Wednesday each month at 4pm UK time. The first of these took place on July 2, where issues around signalling license information were discussed. JATS is the XML standard for ingesting scholarly articles into PubMed Central, and the JATS4R group was sparked after inconsistencies had been observed in the XML that publishers actually deliver to PubMed Central.

Automated import of scholarly articles into the English Wikisource

Tests for importing the full text of scholarly articles into Wikisource (and the associated images into Commons) continued, with a number of bugs squeezed in the process. Some of these bugs reflect the inconsistencies mentioned above and inform the JATS4R process with concrete examples.

Open Access Media Importer

The following represents a selection of the ca. 300 files that have been uploaded by the Open Access Media Importer this month, bringing the total to over 17,200. If you can think of wiki pages where these files could be useful, please put them in there or let us know.

• Gene-bionetworks-involved-in-the-epigenetic-transgenerational-inheritance-of-altered-mate-12864 2013 6162 MOESM1 ESM.ogv
• Methamphetamine-intoxication-in-a-dog-case-report-1746-6148-10-139-S1.ogv
• Ly6Chigh-Monocytes-Become-Alternatively-Activated-Macrophages-in-Schistosome-Granulomas-with-Help-ppat.1004080.s005.ogv
• Objects-tell-us-what-action-we-can-expect-dissociating-brain-areas-for-retrieval-and-exploitation-Movie1.ogv
• Individual-Pause-and-Go-Motion-Is-Instrumental-to-the-Formation-and-Maintenance-of-Swarms-of-pone.0101636.s016.ogv
• Lin-28-Regulates-Oogenesis-and-Muscle-Formation-in-Drosophila-melanogaster-pone.0101141.s002.ogv
• Modeling-Glial-Contributions-to-Seizures-and-Epileptogenesis-Cation-Chloride-Cotransporters-in-pone.0101117.s006.ogv
• LEGO®-Bricks-as-Building-Blocks-for-Centimeter-Scale-Biological-Environments-The-Case-of-Plants-pone.0100867.s009.ogv
• Computational-Model-of-Erratic-Arrhythmias-in-a-Cardiac-Cell-Network-The-Role-of-Gap-Junctions-pone.0100288.s012.ogv
• Maternal-Food-Provisioning-in-a-Substrate-Brooding-African-Cichlid-pone.0099094.s001.ogv
• Venom-Variation-during-Prey-Capture-by-the-Cone-Snail-Conus-textile-pone.0098991.s003.ogv
• Foldscope-Origami-Based-Paper-Microscope-pone.0098781.s010.ogv
• Quantitative-Characterization-of-Cell-Behaviors-through-Cell-Cycle-Progression-via-Automated-Cell-pone.0098762.s005.ogv
• How-Does-a-Carnivore-Guild-Utilise-a-Substantial-but-Unpredictable-Anthropogenic-Food-Source-pone.0097937.s004.ogv
• The-Billion-Cell-Construct-Will-Three-Dimensional-Printing-Get-Us-There-pbio.1001882.s001.ogv
• Development-of-a-preclinical-model-of-donation-after-circulatory-determination-of-death-for-2047-1440-3-13-S1.ogv
• Manipulation-of-visual-biofeedback-during-gait-with-a-time-delayed-adaptive-Virtual-Mirror-Box-1743-0003-11-101-S1.ogv
• Genetic-Ecological-and-Morphological-Divergence-between-Populations-of-the-Endangered-Mexican-pone.0101870.s009.ogv
• In-Vitro-Shear-Stress-Measurements-Using-Particle-Image-Velocimetry-in-a-Family-of-Carotid-Artery-pone.0098209.s005.ogv
• Electronic-bypass-of-spinal-lesions-activation-of-lower-motor-neurons-directly-driven-by-cortical-1743-0003-11-107-S3.ogv
• Another-Lesson-from-Plants-The-Forward-Osmosis-Based-Actuator-pone.0102461.s004.ogv
• Visualization-of-Phosphatidic-Acid-Fluctuations-in-the-Plasma-Membrane-of-Living-Cells-pone.0102526.s013.ogv
• The-Bear-Essentials-Actualistic-Research-on-Ursus-arctos-arctos-in-the-Spanish-Pyrenees-and-Its-pone.0102457.s005.ogv
• Stiffening-Induced-High-Pulsatility-Flow-Activates-Endothelial-Inflammation-via-a-TLR2NF-B-Pathway-pone.0102195.s001.ogv
• Human-Quadrupeds-Primate-Quadrupedalism-and-Uner-Tan-Syndrome-pone.0101758.s003.ogv
• Large-scale-cell-production-of-stem-cells-for-clinical-application-using-the-automated-cell-1472-6750-13-102-S4.ogv
• Craniofacial-divergence-by-distinct-prenatal-growth-patterns-in-Fgfr2-mutant-mice-1471-213X-14-8-S9.ogv
• Real-Time-Imaging-Reveals-the-Dynamics-of-Leukocyte-Behaviour-during-Experimental-Cerebral-Malaria-ppat.1004236.s017.ogv
• The-Neutral-Self-Assembling-Peptide-Hydrogel-SPG-178-as-a-Topical-Hemostatic-Agent-pone.0102778.s001.ogv
• Modifications-to-the-Aesops-Fable-Paradigm-Change-New-Caledonian-Crow-Performances-pone.0103049.s003.ogv
• String-Theory---The-Physics-of-String-Bending-and-Other-Electric-Guitar-Techniques-pone.0102088.s003.ogv
• Prosody-in-the-hands-of-the-speaker-Movie2.ogv
• Optical-Imaging-of-Neuronal-Activity-and-Visualization-of-Fine-Neural-Structures-in-Non-Desheathed-pone.0103459.s001.ogv
• Intoxication-of-Host-Cells-by-the-T3SS-Phospholipase-ExoU-PI(45)P2-Associated-Cytoskeletal-Collapse-pone.0103127.s009.ogv
• Analyzing-Cold-Tolerance-Mechanism-in-Transgenic-Zebrafish-(Danio-rerio)-pone.0102492.s010.ogv
• Ocular-Pentastomiasis-in-the-Democratic-Republic-of-the-Congo-pntd.0003041.s001.ogv

Open Access File of the Day

The following files have been featured as Open Access File of the Day this month:

• July 31: modeling of the respiratory system of insects
• 
  July 30: Transposition of the great vessels, a heart defect.
• 
  July 29: The preying mantis Perlamantis allibertii.
• July 28: Migration of Atlantic bluefin tuna.
• 
  July 27: The frog Anodonthyla rouxae from the family Microhylidae.
• 
  July 26: The moth Acontia cretata from the family Noctuidae.
• 
  July 25: The beetle Rhadine lindrothi.
• 
  July 24: The sand stargazeer Dactyloscopus tridigitatus.
• 
  July 23: A nymph of the leafhopper Pendarus magnus.
• 
  July 22: The spider Fecenia cylindrata.
• 
  July 21: Haplochromis goldschmidti.
• 
  July 20: The ant lion Brachynemurus sackeni.
• 
  July 19: The flowering plant Annickia affinis.
• 
  July 18: The spider Neoleptoneta anopica.
• July 17: Simultaneous video and EEG recordings of a pair of guitarists during improvisation.
• 
  July 16: Organ-specific patterns of endopolyploidy in the giant ant Dinoponera australis.
• 
  July 15: The jellyfish Haliclystus antarcticus.
• 
  July 14: the prehistoric extinct insect Termitaradus mitnicki
• 
  July 13: the monitor lizard Varanus bitatawa
• 
  July 12: region around Mount Binalud
• 
  July 11: larvae of the firefly Alecton discoidalis
• 
  July 10: motor neuron pathways
• July 9: the tardigrade Richtersius coronifer entering a state of cryptobiosis
• 
  July 8: shell of Huttonella bicolor
• 
  July 7: the parasitoid wasp Electrostephanus petiolatus Brues of family Stephanidae
• 
  July 6: the snake Montivipera wagneri
• 
  July 5: medical imaging showing Monckeberg's arteriosclerosis
• 
  July 4: Miopontonia yongei, a shrimp from family Palaemonidae
• 
  July 3: eye pattern of the insect Masteria petrunkevitchi
• 
  July 2: the prehistoric reptile Kaprosuchus
• 
  July 1: the spider Acanthoscurria gomesiana

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In this issue

July 2014

• France report
• Germany report
• Italy report
• Netherlands report
• Sweden report
• UK report
• USA report
• Open Access report
• Calendar

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